Avian influenza A virus monitoring in wild birds in Bavaria: occurrence and heterogeneity of H5 and N1 encoding genes.
Identifieur interne : 000356 ( Main/Exploration ); précédent : 000355; suivant : 000357Avian influenza A virus monitoring in wild birds in Bavaria: occurrence and heterogeneity of H5 and N1 encoding genes.
Auteurs : V. Lang [Allemagne] ; M. Rinder ; A. Hafner-Marx ; S. Rabl ; K H Bogner ; A. Neubauer-Juric ; M. BüttnerSource :
- Zoonoses and public health [ 1863-2378 ] ; 2010.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Alignement de séquences (MeSH), Allemagne (épidémiologie), Animaux (MeSH), Animaux sauvages (virologie), Glycoprotéine hémagglutinine du virus influenza (génétique), Grippe chez les oiseaux (génétique), Grippe chez les oiseaux (virologie), Grippe chez les oiseaux (épidémiologie), Génome viral (MeSH), Oiseaux (virologie), Phylogenèse (MeSH), Prévalence (MeSH), RT-PCR (médecine vétérinaire), RT-PCR (méthodes), Réservoirs de maladies (MeSH), Sialidase (génétique), Sous-type H5N1 du virus de la grippe A (classification), Sous-type H5N1 du virus de la grippe A (génétique), Sous-type H5N1 du virus de la grippe A (isolement et purification), Virus de la grippe A (classification), Virus de la grippe A (génétique).
- MESH :
- génétique : ARN viral, Glycoprotéine hémagglutinine du virus influenza, Grippe chez les oiseaux, Sialidase, Sous-type H5N1 du virus de la grippe A, Virus de la grippe A.
- isolement et purification : Sous-type H5N1 du virus de la grippe A.
- médecine vétérinaire : RT-PCR.
- méthodes : RT-PCR.
- virologie : Animaux sauvages, Grippe chez les oiseaux, Oiseaux.
- épidémiologie : Allemagne, Grippe chez les oiseaux.
- Alignement de séquences, Animaux, Génome viral, Phylogenèse, Prévalence, Réservoirs de maladies.
- Wicri :
- geographic : Allemagne.
English descriptors
- KwdEn :
- Animals (MeSH), Animals, Wild (virology), Birds (virology), Disease Reservoirs (MeSH), Genome, Viral (MeSH), Germany (epidemiology), Hemagglutinin Glycoproteins, Influenza Virus (genetics), Influenza A Virus, H5N1 Subtype (classification), Influenza A Virus, H5N1 Subtype (genetics), Influenza A Virus, H5N1 Subtype (isolation & purification), Influenza A virus (classification), Influenza A virus (genetics), Influenza in Birds (epidemiology), Influenza in Birds (genetics), Influenza in Birds (virology), Neuraminidase (genetics), Phylogeny (MeSH), Prevalence (MeSH), RNA, Viral (genetics), Reverse Transcriptase Polymerase Chain Reaction (methods), Reverse Transcriptase Polymerase Chain Reaction (veterinary), Sequence Alignment (MeSH).
- MESH :
- chemical , genetics : Hemagglutinin Glycoproteins, Influenza Virus, Neuraminidase, RNA, Viral.
- geographic , epidemiology : Germany.
- classification : Influenza A Virus, H5N1 Subtype, Influenza A virus.
- epidemiology : Influenza in Birds.
- genetics : Influenza A Virus, H5N1 Subtype, Influenza A virus, Influenza in Birds.
- isolation & purification : Influenza A Virus, H5N1 Subtype.
- methods : Reverse Transcriptase Polymerase Chain Reaction.
- veterinary : Reverse Transcriptase Polymerase Chain Reaction.
- virology : Animals, Wild, Birds, Influenza in Birds.
- Animals, Disease Reservoirs, Genome, Viral, Phylogeny, Prevalence, Sequence Alignment.
Abstract
To define avian influenza virus prevalence in wild birds in Bavaria, 12,930 tracheal, cloacal swabs or tissue samples from various waterfowl species were screened between January 2006 and December 2007. In 291 (2.3%) birds, genomes of influenza A viruses were detected by reverse transcription real-time PCR (rRT-PCR) targeting the matrix protein genes. Furthermore, solitary H5 hemagglutinin or N1 neuraminidase encoding genes were identified in 35 (0.3%) apparently healthy birds; whereas highly pathogenic (HPAI) H5N1 virus genomes were only diagnosed in dead wild birds (n = 93; 0.7%) found across this federal state region. In this study, multiple import events for H5N1 viruses were confirmed during 2006 and 2007. In addition, our findings argue against an existing HPAI H5N1 reservoir in aquatic birds in Bavaria. By contrast, phylogenetic analyses of the H5 or N1 sequences of low pathogenic avian influenza (LPAI) viruses revealed a marked diversity and multiple genetic lineages. This diversity of LPAI H5 and N1 subtype components indicates the existence of LPAI HA and NA gene pools which differ from the Bavarian HPAI H5N1. Moreover, the hemagglutinin amino acid differences between LPAI H5 viruses of a western European genotypic lineage observed in wild birds suggest a continuous evolution of LPAI viruses in Bavaria.
DOI: 10.1111/j.1863-2378.2010.01326.x
PubMed: 20298489
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Hafner-Marx</name></author><author><name sortKey="Rabl, S" sort="Rabl, S" uniqKey="Rabl S" first="S" last="Rabl">S. Rabl</name></author><author><name sortKey="Bogner, K H" sort="Bogner, K H" uniqKey="Bogner K" first="K H" last="Bogner">K H Bogner</name></author><author><name sortKey="Neubauer Juric, A" sort="Neubauer Juric, A" uniqKey="Neubauer Juric A" first="A" last="Neubauer-Juric">A. Neubauer-Juric</name></author><author><name sortKey="Buttner, M" sort="Buttner, M" uniqKey="Buttner M" first="M" last="Büttner">M. Büttner</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010</date><idno type="RBID">pubmed:20298489</idno><idno type="pmid">20298489</idno><idno type="doi">10.1111/j.1863-2378.2010.01326.x</idno><idno type="wicri:Area/Main/Corpus">000347</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000347</idno><idno type="wicri:Area/Main/Curation">000347</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000347</idno><idno type="wicri:Area/Main/Exploration">000347</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Avian influenza A virus monitoring in wild birds in Bavaria: occurrence and heterogeneity of H5 and N1 encoding genes.</title><author><name sortKey="Lang, V" sort="Lang, V" uniqKey="Lang V" first="V" last="Lang">V. Lang</name><affiliation wicri:level="1"><nlm:affiliation>Bavarian Health and Food Safety Authority, Oberschleissheim, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bavarian Health and Food Safety Authority, Oberschleissheim</wicri:regionArea><wicri:noRegion>Oberschleissheim</wicri:noRegion><wicri:noRegion>Oberschleissheim</wicri:noRegion><wicri:noRegion>Oberschleissheim</wicri:noRegion></affiliation></author><author><name sortKey="Rinder, M" sort="Rinder, M" uniqKey="Rinder M" first="M" last="Rinder">M. Rinder</name></author><author><name sortKey="Hafner Marx, A" sort="Hafner Marx, A" uniqKey="Hafner Marx A" first="A" last="Hafner-Marx">A. Hafner-Marx</name></author><author><name sortKey="Rabl, S" sort="Rabl, S" uniqKey="Rabl S" first="S" last="Rabl">S. Rabl</name></author><author><name sortKey="Bogner, K H" sort="Bogner, K H" uniqKey="Bogner K" first="K H" last="Bogner">K H Bogner</name></author><author><name sortKey="Neubauer Juric, A" sort="Neubauer Juric, A" uniqKey="Neubauer Juric A" first="A" last="Neubauer-Juric">A. Neubauer-Juric</name></author><author><name sortKey="Buttner, M" sort="Buttner, M" uniqKey="Buttner M" first="M" last="Büttner">M. Büttner</name></author></analytic><series><title level="j">Zoonoses and public health</title><idno type="eISSN">1863-2378</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Animals, Wild (virology)</term><term>Birds (virology)</term><term>Disease Reservoirs (MeSH)</term><term>Genome, Viral (MeSH)</term><term>Germany (epidemiology)</term><term>Hemagglutinin Glycoproteins, Influenza Virus (genetics)</term><term>Influenza A Virus, H5N1 Subtype (classification)</term><term>Influenza A Virus, H5N1 Subtype (genetics)</term><term>Influenza A Virus, H5N1 Subtype (isolation & purification)</term><term>Influenza A virus (classification)</term><term>Influenza A virus (genetics)</term><term>Influenza in Birds (epidemiology)</term><term>Influenza in Birds (genetics)</term><term>Influenza in Birds (virology)</term><term>Neuraminidase (genetics)</term><term>Phylogeny (MeSH)</term><term>Prevalence (MeSH)</term><term>RNA, Viral (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (methods)</term><term>Reverse Transcriptase Polymerase Chain Reaction (veterinary)</term><term>Sequence Alignment (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Alignement de séquences (MeSH)</term><term>Allemagne (épidémiologie)</term><term>Animaux (MeSH)</term><term>Animaux sauvages (virologie)</term><term>Glycoprotéine hémagglutinine du virus influenza (génétique)</term><term>Grippe chez les oiseaux (génétique)</term><term>Grippe chez les oiseaux (virologie)</term><term>Grippe chez les oiseaux (épidémiologie)</term><term>Génome viral (MeSH)</term><term>Oiseaux (virologie)</term><term>Phylogenèse (MeSH)</term><term>Prévalence (MeSH)</term><term>RT-PCR (médecine vétérinaire)</term><term>RT-PCR (méthodes)</term><term>Réservoirs de maladies (MeSH)</term><term>Sialidase (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (classification)</term><term>Sous-type H5N1 du virus de la grippe A (génétique)</term><term>Sous-type H5N1 du virus de la grippe A (isolement et purification)</term><term>Virus de la grippe A (classification)</term><term>Virus de la grippe A (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Hemagglutinin Glycoproteins, Influenza Virus</term><term>Neuraminidase</term><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Germany</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N1 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qualifier="veterinary" xml:lang="en"><term>Reverse Transcriptase Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Animaux sauvages</term><term>Grippe chez les oiseaux</term><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Animals, Wild</term><term>Birds</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Allemagne</term><term>Grippe chez les oiseaux</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Disease Reservoirs</term><term>Genome, Viral</term><term>Phylogeny</term><term>Prevalence</term><term>Sequence Alignment</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Animaux</term><term>Génome viral</term><term>Phylogenèse</term><term>Prévalence</term><term>Réservoirs de maladies</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Allemagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">To define avian influenza virus prevalence in wild birds in Bavaria, 12,930 tracheal, cloacal swabs or tissue samples from various waterfowl species were screened between January 2006 and December 2007. In 291 (2.3%) birds, genomes of influenza A viruses were detected by reverse transcription real-time PCR (rRT-PCR) targeting the matrix protein genes. Furthermore, solitary H5 hemagglutinin or N1 neuraminidase encoding genes were identified in 35 (0.3%) apparently healthy birds; whereas highly pathogenic (HPAI) H5N1 virus genomes were only diagnosed in dead wild birds (n = 93; 0.7%) found across this federal state region. In this study, multiple import events for H5N1 viruses were confirmed during 2006 and 2007. In addition, our findings argue against an existing HPAI H5N1 reservoir in aquatic birds in Bavaria. By contrast, phylogenetic analyses of the H5 or N1 sequences of low pathogenic avian influenza (LPAI) viruses revealed a marked diversity and multiple genetic lineages. This diversity of LPAI H5 and N1 subtype components indicates the existence of LPAI HA and NA gene pools which differ from the Bavarian HPAI H5N1. Moreover, the hemagglutinin amino acid differences between LPAI H5 viruses of a western European genotypic lineage observed in wild birds suggest a continuous evolution of LPAI viruses in Bavaria.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20298489</PMID><DateCompleted><Year>2011</Year><Month>04</Month><Day>08</Day></DateCompleted><DateRevised><Year>2010</Year><Month>11</Month><Day>18</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1863-2378</ISSN><JournalIssue CitedMedium="Internet"><Volume>57</Volume><Issue>7-8</Issue><PubDate><Year>2010</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Zoonoses and public health</Title><ISOAbbreviation>Zoonoses Public Health</ISOAbbreviation></Journal><ArticleTitle>Avian influenza A virus monitoring in wild birds in Bavaria: occurrence and heterogeneity of H5 and N1 encoding genes.</ArticleTitle><Pagination><MedlinePgn>e184-94</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/j.1863-2378.2010.01326.x</ELocationID><Abstract><AbstractText>To define avian influenza virus prevalence in wild birds in Bavaria, 12,930 tracheal, cloacal swabs or tissue samples from various waterfowl species were screened between January 2006 and December 2007. In 291 (2.3%) birds, genomes of influenza A viruses were detected by reverse transcription real-time PCR (rRT-PCR) targeting the matrix protein genes. Furthermore, solitary H5 hemagglutinin or N1 neuraminidase encoding genes were identified in 35 (0.3%) apparently healthy birds; whereas highly pathogenic (HPAI) H5N1 virus genomes were only diagnosed in dead wild birds (n = 93; 0.7%) found across this federal state region. In this study, multiple import events for H5N1 viruses were confirmed during 2006 and 2007. In addition, our findings argue against an existing HPAI H5N1 reservoir in aquatic birds in Bavaria. By contrast, phylogenetic analyses of the H5 or N1 sequences of low pathogenic avian influenza (LPAI) viruses revealed a marked diversity and multiple genetic lineages. This diversity of LPAI H5 and N1 subtype components indicates the existence of LPAI HA and NA gene pools which differ from the Bavarian HPAI H5N1. Moreover, the hemagglutinin amino acid differences between LPAI H5 viruses of a western European genotypic lineage observed in wild birds suggest a continuous evolution of LPAI viruses in Bavaria.</AbstractText><CopyrightInformation>© 2010 Blackwell Verlag GmbH.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lang</LastName><ForeName>V</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Bavarian Health and Food Safety Authority, Oberschleissheim, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rinder</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Hafner-Marx</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Rabl</LastName><ForeName>S</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Bogner</LastName><ForeName>K H</ForeName><Initials>KH</Initials></Author><Author ValidYN="Y"><LastName>Neubauer-Juric</LastName><ForeName>A</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Büttner</LastName><ForeName>M</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Zoonoses Public Health</MedlineTA><NlmUniqueID>101300786</NlmUniqueID><ISSNLinking>1863-1959</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019267">Hemagglutinin Glycoproteins, Influenza Virus</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C109963">hemagglutinin, avian influenza A virus</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.2.1.18</RegistryNumber><NameOfSubstance UI="D009439">Neuraminidase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000835" MajorTopicYN="N">Animals, Wild</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004197" MajorTopicYN="N">Disease Reservoirs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005858" MajorTopicYN="N" Type="Geographic">Germany</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019267" MajorTopicYN="N">Hemagglutinin Glycoproteins, Influenza Virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053124" MajorTopicYN="N">Influenza A Virus, H5N1 Subtype</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009439" MajorTopicYN="N">Neuraminidase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>3</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>4</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20298489</ArticleId><ArticleId IdType="pii">JVB1326</ArticleId><ArticleId IdType="doi">10.1111/j.1863-2378.2010.01326.x</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country></list><tree><noCountry><name sortKey="Bogner, K H" sort="Bogner, K H" uniqKey="Bogner K" first="K H" last="Bogner">K H Bogner</name><name sortKey="Buttner, M" sort="Buttner, M" uniqKey="Buttner M" first="M" last="Büttner">M. Büttner</name><name sortKey="Hafner Marx, A" sort="Hafner Marx, A" uniqKey="Hafner Marx A" first="A" last="Hafner-Marx">A. Hafner-Marx</name><name sortKey="Neubauer Juric, A" sort="Neubauer Juric, A" uniqKey="Neubauer Juric A" first="A" last="Neubauer-Juric">A. Neubauer-Juric</name><name sortKey="Rabl, S" sort="Rabl, S" uniqKey="Rabl S" first="S" last="Rabl">S. Rabl</name><name sortKey="Rinder, M" sort="Rinder, M" uniqKey="Rinder M" first="M" last="Rinder">M. Rinder</name></noCountry><country name="Allemagne"><noRegion><name sortKey="Lang, V" sort="Lang, V" uniqKey="Lang V" first="V" last="Lang">V. Lang</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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